MPX in the US

About

These data provide a longitudinal view of MPX cases by state in the United states. These data are pulled from the Centers for Disease Control and Prevention Monkeypox dashboard and stored in this repository.

Overall Incidence

overall = {
  const co2data = await FileAttachment('https://raw.githubusercontent.com/wf-id/us-mpx/main/output/us-incidence.csv')
    .csv({ typed: true });
  return co2data.map(d => { 
    d["Date"] = Date(d["ReportDT"]);
    return d; 
  });
}

//#| eval: true
Plot.plot({
  y: {
    grid: true,
    label: "Reported Cases"
  },
  x: {
    label: "Epi Date"
  },
  marks: [
    Plot.line(overall, {
    x: "EpidateDT", 
    y: "CaseCNT"}),
  ]
});

Graphics

Select one or more states below to see the table of cases information and an associated graph of cumulative cases. Please note that individual state metrics may disagree with those posted on the CDC dashboard due to reporting delays.

data = {
  const co2data = await FileAttachment('https://raw.githubusercontent.com/wf-id/us-mpx/main/output/mpx.csv')
    .csv({ typed: true });
  return co2data.map(d => { 
    d["Date"] = Date(d["DateDT"]);
    return d; 
  });
}

viewof islands = Inputs.select(data.map(d => d.StateDSC), {
  multiple: true, 
  label: "StateDSC", 
  initialValue: "Alabama",
  sort: true, 
  unique: true})
  
 //islands

//#| eval: true
Plot.plot({
  y: {
    grid: true,
    label: "Cumulative Cases"
  },
  marks: [
    Plot.line(filtered, {
    x: "DateDT", 
    y: "CasesCumulativeCNT", 
    stroke: "StateDSC"}),
    Plot.text(filtered, Plot.selectLast({
    x: "DateDT",
    y: "CasesCumulativeCNT",
    z: "StateDSC",
    text: "StateDSC",
    textAnchor: "CasesCumulativeCNT",
    })
    ),
  ]
});

filtered = data.filter(function(data) {
  return islands.includes(data.StateDSC);
});

Inputs.table(filtered)